STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO77996.1KEGG: hypothetical protein; SPTR: Putative uncharacterized protein. (193 aa)    
Predicted Functional Partners:
ADO77997.1
Protein of unknown function DUF115; COGs: COG2604 conserved hypothetical protein; InterPro IPR002826; KEGG: tit:Thit_0477 protein of unknown function DUF115; PFAM: protein of unknown function DUF115; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF115.
 
    0.962
csrA
Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.
   
   0.776
ADO78001.1
Flagellin domain protein; COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR001492:IPR001029; KEGG: hmo:HM1_1250 flagellin protein; PFAM: flagellin domain protein; SPTR: Flagellin domain protein; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region; Belongs to the bacterial flagellin family.
  
   0.743
ADO78002.1
COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR013384:IPR001492; KEGG: hor:Hore_17130 flagellar hook-associated protein 3; PFAM: flagellin domain protein; SPTR: Flagellar hook-associated protein 3; TIGRFAM: flagellar hook-associated protein 3; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region; TIGRFAM: flagellar hook-associated protein 3.
  
   0.698
ADO77995.1
Acylneuraminate cytidylyltransferase; COGs: COG0684 Demethylmenaquinone methyltransferase; InterPro IPR003329:IPR005493; KEGG: syd:Syncc9605_2247 demethylmenaquinone methyltransferase-like; PFAM: acylneuraminate cytidylyltransferase; Dimethylmenaquinone methyltransferase; SPTR: Cytidylyltransferase domain protein; PFAM: Cytidylyltransferase; Demethylmenaquinone methyltransferase.
       0.694
fliW
Protein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
   
   0.649
ADO77288.1
KEGG: nth:Nther_2785 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.636
ADO77262.1
COGs: COG4717 conserved hypothetical protein; KEGG: SMC domain protein; SPTR: SMC domain protein.
  
     0.630
ADO78004.1
FlgN family protein; InterPro IPR007809; KEGG: hor:Hore_17150 hypothetical protein; PFAM: FlgN family protein; SPTR: Putative uncharacterized protein; PFAM: FlgN protein.
 
     0.618
ADO77153.1
KEGG: hor:Hore_11980 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Predicted metal-binding protein (DUF2103).
  
     0.587
Your Current Organism:
Halanaerobium praevalens
NCBI taxonomy Id: 572479
Other names: H. praevalens DSM 2228, Halanaerobium praevalens ATCC 33744, Halanaerobium praevalens DSM 2228, Halanaerobium praevalens GSL, Halanaerobium praevalens str. DSM 2228, Halanaerobium praevalens strain DSM 2228
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.