STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO82593.1CDP-glucose 4,6-dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR013445:IPR016040; KEGG: bfs:BF2602 putative LPS biosynthesis related DNTP-hexose dehydratase-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C6JIK4 Putative uncharacterized protein; TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: CDP-glucose 4,6-dehydratase. (360 aa)    
Predicted Functional Partners:
ADO82592.1
Glucose-1-phosphate cytidylyltransferase; COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR005835:IPR013446; KEGG: bfs:BF2603 putative LPS biosynthesis-related sugar-phosphate nucleotidyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate cytidylyltransferase; SPTR: C6JIK5 Putative uncharacterized protein; TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate c [...]
 0.998
ADO82594.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.948
ADO82595.1
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR016040; KEGG: dhd:Dhaf_4183 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: B7AJ78 Putative uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase family.
 
     0.848
ADO82443.1
COGs: COG1210 UDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005771; KEGG: fnu:FN1266 UTP--glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; SPTR: C3WAA9 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase.
  
 
 0.826
ADO82596.1
dTDP-4-dehydrorhamnose 35-epimerase related protein; COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888:IPR011051:IPR014710; KEGG: tme:Tmel_1070 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; SPTR: C3WA98 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase.
  
  
 0.753
rpsN
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
 0.649
rpsS
SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.649
ADO82358.1
Ribosomal protein L7Ae/L30e/S12e/Gadd45; InterPro IPR007393:IPR004038; KEGG: fnu:FN2021 ABC1 family protein; PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; protein of unknown function DUF448; SPTR: C6JIH9 ABC1 family protein; PFAM: Protein of unknown function (DUF448); Ribosomal protein L7Ae/L30e/S12e/Gadd45 family.
   
  0.648
rpsL
SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 0.648
rpsC
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
 0.638
Your Current Organism:
Ilyobacter polytropus
NCBI taxonomy Id: 572544
Other names: I. polytropus DSM 2926, Ilyobacter polytropus DSM 2926, Ilyobacter polytropus str. DSM 2926, Ilyobacter polytropus strain DSM 2926
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