STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO83097.1COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056:IPR011060:IPR013785; KEGG: fnu:FN0680 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: C6JKN5 Ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase. (209 aa)    
Predicted Functional Partners:
ADO82906.1
COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: tpd:Teth39_0491 transketolase domain-containing protein; PFAM: Transketolase domain protein; SPTR: C6PK27 Transketolase domain protein; PFAM: Transketolase, thiamine diphosphate binding domain.
 
 0.994
ADO83264.1
COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: fnu:FN0294 transketolase subunit A; PFAM: Transketolase domain protein; SPTR: C6JIV3 Transketolase; PFAM: Transketolase, thiamine diphosphate binding domain.
 
 0.994
rsgA
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
 
    0.977
ADO82786.1
COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR003500:IPR004785; KEGG: fnu:FN1874 ribose 5-phosphate isomerase; PFAM: Ribose/galactose isomerase; PRIAM: Galactose-6-phosphate isomerase; SPTR: C6JLT4 Ribose 5-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family.
  
 
 0.946
ADO82905.1
COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR015941:IPR009014:IPR005475:IPR005476; KEGG: pca:Pcar_2719 transketolase, C-terminal subunit; PFAM: Transketolase central region; Transketolase domain protein; SPTR: Q3A102 Transketolase subunit B; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain.
 
 
 0.932
ADO83263.1
COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR009014:IPR015941:IPR005475:IPR005476; KEGG: fnu:FN0295 transketolase; PFAM: Transketolase central region; Transketolase domain protein; SPTR: C6JIV4 Transketolase; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain.
 
 
 0.930
ADO81862.1
SAF domain protein; InterPro IPR013974; KEGG: chy:CHY_1255 UxaA family hydrolase; PFAM: SAF domain protein; SPTR: Q3ACP5 Hydrolase, UxaA family; PFAM: SAF domain.
     
 0.800
ADO81863.1
COGs: COG2721 Altronate dehydratase; InterPro IPR007392; KEGG: chy:CHY_1256 UxaA family hydrolase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; PRIAM: Altronate dehydratase; SPTR: Q3ACP4 Hydrolase, UxaA family; PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus.
     
 0.800
ADO83096.1
Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR011991:IPR000835; KEGG: fnu:FN0681 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C6JKN6 Transcription regulator; PFAM: MarR family.
  
    0.800
ADO82266.1
Carbohydrate kinase, FGGY; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: spe:Spro_2464 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY-like; SPTR: C0C493 Putative uncharacterized protein; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain.
 
 
 0.745
Your Current Organism:
Ilyobacter polytropus
NCBI taxonomy Id: 572544
Other names: I. polytropus DSM 2926, Ilyobacter polytropus DSM 2926, Ilyobacter polytropus str. DSM 2926, Ilyobacter polytropus strain DSM 2926
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