node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADO83105.1 | ADO83109.1 | Ilyop_1324 | Ilyop_1328 | COGs: COG1837 RNA-binding protein (contains KH domain); InterPro IPR009019; KEGG: fnu:FN0285 RNA binding protein; SPTR: C3WDQ6 RNA binding protein; Belongs to the UPF0109 family. | Protein of unknown function DUF2168; COGs: COG4752 conserved hypothetical protein; InterPro IPR019230; KEGG: fnu:FN0282 hypothetical protein; PFAM: Protein of unknown function DUF2168; SPTR: C6JKD4 tRNA (Guanine-N1)-methyltransferase; PFAM: Uncharacterized protein conserved in bacteria (DUF2168). | 0.623 |
ADO83105.1 | rimM | Ilyop_1324 | Ilyop_1325 | COGs: COG1837 RNA-binding protein (contains KH domain); InterPro IPR009019; KEGG: fnu:FN0285 RNA binding protein; SPTR: C3WDQ6 RNA binding protein; Belongs to the UPF0109 family. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.883 |
ADO83105.1 | rplS | Ilyop_1324 | Ilyop_0192 | COGs: COG1837 RNA-binding protein (contains KH domain); InterPro IPR009019; KEGG: fnu:FN0285 RNA binding protein; SPTR: C3WDQ6 RNA binding protein; Belongs to the UPF0109 family. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.660 |
ADO83105.1 | rpsP | Ilyop_1324 | Ilyop_1372 | COGs: COG1837 RNA-binding protein (contains KH domain); InterPro IPR009019; KEGG: fnu:FN0285 RNA binding protein; SPTR: C3WDQ6 RNA binding protein; Belongs to the UPF0109 family. | COGs: COG0228 Ribosomal protein S16; InterPro IPR020592:IPR000307; KEGG: fnu:FN1392 SSU ribosomal protein S16P; PFAM: ribosomal protein S16; SPTR: C3W9P2 SSU ribosomal protein S16P; TIGRFAM: ribosomal protein S16; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.767 |
ADO83105.1 | rsmA | Ilyop_1324 | Ilyop_1321 | COGs: COG1837 RNA-binding protein (contains KH domain); InterPro IPR009019; KEGG: fnu:FN0285 RNA binding protein; SPTR: C3WDQ6 RNA binding protein; Belongs to the UPF0109 family. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.644 |
ADO83105.1 | trmD | Ilyop_1324 | Ilyop_1326 | COGs: COG1837 RNA-binding protein (contains KH domain); InterPro IPR009019; KEGG: fnu:FN0285 RNA binding protein; SPTR: C3WDQ6 RNA binding protein; Belongs to the UPF0109 family. | tRNA (Guanine37-N(1)-) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.763 |
ADO83109.1 | ADO83105.1 | Ilyop_1328 | Ilyop_1324 | Protein of unknown function DUF2168; COGs: COG4752 conserved hypothetical protein; InterPro IPR019230; KEGG: fnu:FN0282 hypothetical protein; PFAM: Protein of unknown function DUF2168; SPTR: C6JKD4 tRNA (Guanine-N1)-methyltransferase; PFAM: Uncharacterized protein conserved in bacteria (DUF2168). | COGs: COG1837 RNA-binding protein (contains KH domain); InterPro IPR009019; KEGG: fnu:FN0285 RNA binding protein; SPTR: C3WDQ6 RNA binding protein; Belongs to the UPF0109 family. | 0.623 |
ADO83109.1 | rimM | Ilyop_1328 | Ilyop_1325 | Protein of unknown function DUF2168; COGs: COG4752 conserved hypothetical protein; InterPro IPR019230; KEGG: fnu:FN0282 hypothetical protein; PFAM: Protein of unknown function DUF2168; SPTR: C6JKD4 tRNA (Guanine-N1)-methyltransferase; PFAM: Uncharacterized protein conserved in bacteria (DUF2168). | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.674 |
ADO83109.1 | rsmA | Ilyop_1328 | Ilyop_1321 | Protein of unknown function DUF2168; COGs: COG4752 conserved hypothetical protein; InterPro IPR019230; KEGG: fnu:FN0282 hypothetical protein; PFAM: Protein of unknown function DUF2168; SPTR: C6JKD4 tRNA (Guanine-N1)-methyltransferase; PFAM: Uncharacterized protein conserved in bacteria (DUF2168). | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.492 |
ADO83109.1 | trmD | Ilyop_1328 | Ilyop_1326 | Protein of unknown function DUF2168; COGs: COG4752 conserved hypothetical protein; InterPro IPR019230; KEGG: fnu:FN0282 hypothetical protein; PFAM: Protein of unknown function DUF2168; SPTR: C6JKD4 tRNA (Guanine-N1)-methyltransferase; PFAM: Uncharacterized protein conserved in bacteria (DUF2168). | tRNA (Guanine37-N(1)-) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.968 |
infB | rimM | Ilyop_0571 | Ilyop_1325 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.505 |
infB | rplM | Ilyop_0571 | Ilyop_1435 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.928 |
infB | rplS | Ilyop_0571 | Ilyop_0192 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.886 |
infB | rpoA | Ilyop_0571 | Ilyop_1782 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.768 |
infB | rpsP | Ilyop_0571 | Ilyop_1372 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | COGs: COG0228 Ribosomal protein S16; InterPro IPR020592:IPR000307; KEGG: fnu:FN1392 SSU ribosomal protein S16P; PFAM: ribosomal protein S16; SPTR: C3W9P2 SSU ribosomal protein S16P; TIGRFAM: ribosomal protein S16; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.866 |
infB | rsmA | Ilyop_0571 | Ilyop_1321 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.417 |
infB | trmD | Ilyop_0571 | Ilyop_1326 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | tRNA (Guanine37-N(1)-) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.794 |
ispF | trmD | Ilyop_1818 | Ilyop_1326 | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). | tRNA (Guanine37-N(1)-) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.925 |
rimM | ADO83105.1 | Ilyop_1325 | Ilyop_1324 | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | COGs: COG1837 RNA-binding protein (contains KH domain); InterPro IPR009019; KEGG: fnu:FN0285 RNA binding protein; SPTR: C3WDQ6 RNA binding protein; Belongs to the UPF0109 family. | 0.883 |
rimM | ADO83109.1 | Ilyop_1325 | Ilyop_1328 | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | Protein of unknown function DUF2168; COGs: COG4752 conserved hypothetical protein; InterPro IPR019230; KEGG: fnu:FN0282 hypothetical protein; PFAM: Protein of unknown function DUF2168; SPTR: C6JKD4 tRNA (Guanine-N1)-methyltransferase; PFAM: Uncharacterized protein conserved in bacteria (DUF2168). | 0.674 |