STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO83285.1Radical SAM domain protein; COGs: COG1243 Histone acetyltransferase; InterPro IPR013785:IPR007197:IPR006638; KEGG: fnu:FN0153 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q8R6B9 Oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily. (342 aa)    
Predicted Functional Partners:
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.824
ADO83287.1
3-oxoacyl-(acyl-carrier-protein) synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
  
 0.787
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.785
ADO83284.1
COGs: COG1530 Ribonuclease G and E; InterProIPR004659:IPR016027:IPR012340:IPR019307:IPR 003029; KEGG: drm:Dred_2536 ribonuclease; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; PRIAM: Ribonuclease E; SPTR: C6JJB6 Ribonuclease G and E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family.
       0.780
ADO83281.1
DNA integrity scanning, DisA, linker region; COGs: COG1623 nucleic-acid-binding protein (contains the HHH domain); InterPro IPR020781:IPR010994:IPR003390:IPR018906; KEGG: fnu:FN0158 DNA integrity scanning protein DisA; PFAM: DNA integrity scanning, DisA, linker region; protein of unknown function DUF147; SPTR: C6JJB9 DNA-binding protein; PFAM: DisA bacterial checkpoint controller nucleotide-binding; DisA bacterial checkpoint controller linker region; Belongs to the DisA family.
       0.759
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.759
ADO83279.1
HflC protein; HflC and HflK could regulate a protease.
       0.664
ADO83280.1
HflK protein; HflC and HflK could encode or regulate a protease.
       0.664
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.540
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
       0.535
Your Current Organism:
Ilyobacter polytropus
NCBI taxonomy Id: 572544
Other names: I. polytropus DSM 2926, Ilyobacter polytropus DSM 2926, Ilyobacter polytropus str. DSM 2926, Ilyobacter polytropus strain DSM 2926
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.