STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnjRNA-metabolising metallo-beta-lactamase; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (604 aa)    
Predicted Functional Partners:
ADO83491.1
Peptidoglycan glycosyltransferase; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR017790:IPR012338; KEGG: fnu:FN1211 cell division protein FtsI; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: C6JNB5 Cell division protein ftsI; TIGRFAM: penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2.
      0.879
ADO83489.1
Protein of unknown function UPF0044; COGs: COG1534 RNA-binding protein containing KH domain possibly ribosomal protein; InterPro IPR001890:IPR017924; KEGG: fnu:FN1209 putative RNA binding protein; PFAM: protein of unknown function UPF0044; SPTR: C3W9Y6 Putative uncharacterized protein; PFAM: CRS1 / YhbY (CRM) domain; TIGRFAM: putative RNA-binding protein, YhbY family.
       0.789
rny
Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay.
  
 
 0.752
ADO83486.1
Metal dependent phosphohydrolase; COGs: COG3481 HD-superfamily hydrolase; InterPro IPR006674; KEGG: fnu:FN1207 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SPTR: C6JNC0 Putative uncharacterized protein; PFAM: HD domain.
     
 0.737
ADO83485.1
COGs: COG1189 rRNA methylase; InterPro IPR002942:IPR002877:IPR004538; KEGG: lba:Lebu_0340 hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein; SPTR: C6JNC1 Hemolysin; TIGRFAM: hemolysin A; PFAM: S4 domain; FtsJ-like methyltransferase; TIGRFAM: hemolysin TlyA family protein.
 
     0.726
ADO83488.1
COGs: COG1963 conserved hypothetical protein; InterPro IPR003832; KEGG: cth:Cthe_0830 acid phosphatase/vanadium-dependent haloperoxidase related; PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; SPTR: C3W9Y7 Putative uncharacterized protein; PFAM: Divergent PAP2 family.
       0.723
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.696
ADO83484.1
C-terminal processing peptidase-3; COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: fnu:FN1205 protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; PRIAM: C-terminal processing peptidase; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: C6JNC2 S41 family C-terminal processing peptidase; TIGRFAM: carboxyl-terminal protease; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); Belongs to the peptidase S41A family.
       0.677
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
  
 0.677
ADO83218.1
Polyprenyl synthetase; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092:IPR008949; KEGG: fnu:FN1327 dimethylallyltransferase; PFAM: Polyprenyl synthetase; SPTR: C3WA30 Dimethylallyltransferase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
    0.625
Your Current Organism:
Ilyobacter polytropus
NCBI taxonomy Id: 572544
Other names: I. polytropus DSM 2926, Ilyobacter polytropus DSM 2926, Ilyobacter polytropus str. DSM 2926, Ilyobacter polytropus strain DSM 2926
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