STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdaDKEGG: sat:SYN_01577 pyruvoyl-dependent arginine decarboxylase; TIGRFAM: arginine decarboxylase, pyruvoyl- dependent; PFAM: Pyruvoyl-dependent arginine decarboxylase; Belongs to the PdaD family. (159 aa)    
Predicted Functional Partners:
ADB58160.1
TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pub:SAR11_1329 agmatinase; Belongs to the arginase family.
 
  
 0.952
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: hch:HCH_00294 argininosuccinate lyase.
     
 0.801
pgk
PFAM: phosphoglycerate kinase; KEGG: wbm:Wbm0684 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
       0.693
dys
Deoxyhypusine synthase; Catalyzes the NAD-dependent oxidative cleavage of spermidine and the subsequent transfer of the butylamine moiety of spermidine to the epsilon-amino group of a specific lysine residue of the eIF-5A precursor protein to form the intermediate deoxyhypusine residue.
 
   
 0.642
ADB58328.1
TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; KEGG: bpt:Bpet3342 3-hydroxy-3-methylglutaryl- coenzyme A reductase.
      
 0.564
speH
S-adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.
  
  
 0.524
ADB57421.1
PFAM: GTPase of unknown function domain protein; GTP-binding protein HSR1-related; TGS domain protein; KEGG: hypothetical protein.
       0.514
ADB57422.1
Conserved hypothetical protein.
       0.514
ADB57829.1
PFAM: CDP-alcohol phosphatidyltransferase; Nucleotidyl transferase; KEGG: nis:NIS_1256 hypothetical protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.504
leuS
TIGRFAM: leucyl-tRNA synthetase; KEGG: leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.467
Your Current Organism:
Archaeoglobus profundus
NCBI taxonomy Id: 572546
Other names: A. profundus DSM 5631, Archaeoglobus profundus DSM 5631, Archaeoglobus profundus str. DSM 5631, Archaeoglobus profundus strain DSM 5631
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