Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADB58411.1 | ADB58412.1 | Arcpr_1362 | Arcpr_1363 | PFAM: Protein of unknown function DUF171; KEGG: similar to Uncharacterized protein C9orf114; K09142 hypothetical protein. | Hypothetical protein. | 0.671 |
ADB58411.1 | ADB58413.1 | Arcpr_1362 | Arcpr_1364 | PFAM: Protein of unknown function DUF171; KEGG: similar to Uncharacterized protein C9orf114; K09142 hypothetical protein. | Hypothetical protein. | 0.671 |
ADB58411.1 | ADB58414.1 | Arcpr_1362 | Arcpr_1365 | PFAM: Protein of unknown function DUF171; KEGG: similar to Uncharacterized protein C9orf114; K09142 hypothetical protein. | KEGG: bra:BRADO3982 circadian clock protein KaiC; PFAM: Circadian clock protein KaiC central region; KaiA binding; SMART: AAA ATPase. | 0.671 |
ADB58411.1 | rnp1 | Arcpr_1362 | Arcpr_1353 | PFAM: Protein of unknown function DUF171; KEGG: similar to Uncharacterized protein C9orf114; K09142 hypothetical protein. | Ribonuclease P, Rpp29; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 1 family. | 0.783 |
ADB58411.1 | rpl14 | Arcpr_1362 | Arcpr_1351 | PFAM: Protein of unknown function DUF171; KEGG: similar to Uncharacterized protein C9orf114; K09142 hypothetical protein. | Ribosomal protein L14b/L23e; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.783 |
ADB58411.1 | rpl2 | Arcpr_1362 | Arcpr_1358 | PFAM: Protein of unknown function DUF171; KEGG: similar to Uncharacterized protein C9orf114; K09142 hypothetical protein. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.846 |
ADB58411.1 | rpl23 | Arcpr_1362 | Arcpr_1359 | PFAM: Protein of unknown function DUF171; KEGG: similar to Uncharacterized protein C9orf114; K09142 hypothetical protein. | Ribosomal protein L25/L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. | 0.849 |
ADB58411.1 | rpl3 | Arcpr_1362 | Arcpr_1361 | PFAM: Protein of unknown function DUF171; KEGG: similar to Uncharacterized protein C9orf114; K09142 hypothetical protein. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.863 |
ADB58411.1 | rpl4 | Arcpr_1362 | Arcpr_1360 | PFAM: Protein of unknown function DUF171; KEGG: similar to Uncharacterized protein C9orf114; K09142 hypothetical protein. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.849 |
ADB58411.1 | rps17 | Arcpr_1362 | Arcpr_1352 | PFAM: Protein of unknown function DUF171; KEGG: similar to Uncharacterized protein C9orf114; K09142 hypothetical protein. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.799 |
ADB58412.1 | ADB58411.1 | Arcpr_1363 | Arcpr_1362 | Hypothetical protein. | PFAM: Protein of unknown function DUF171; KEGG: similar to Uncharacterized protein C9orf114; K09142 hypothetical protein. | 0.671 |
ADB58412.1 | ADB58413.1 | Arcpr_1363 | Arcpr_1364 | Hypothetical protein. | Hypothetical protein. | 0.829 |
ADB58412.1 | ADB58414.1 | Arcpr_1363 | Arcpr_1365 | Hypothetical protein. | KEGG: bra:BRADO3982 circadian clock protein KaiC; PFAM: Circadian clock protein KaiC central region; KaiA binding; SMART: AAA ATPase. | 0.792 |
ADB58412.1 | rnp1 | Arcpr_1363 | Arcpr_1353 | Hypothetical protein. | Ribonuclease P, Rpp29; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 1 family. | 0.587 |
ADB58412.1 | rpl14 | Arcpr_1363 | Arcpr_1351 | Hypothetical protein. | Ribosomal protein L14b/L23e; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.587 |
ADB58412.1 | rpl2 | Arcpr_1363 | Arcpr_1358 | Hypothetical protein. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.666 |
ADB58412.1 | rpl23 | Arcpr_1363 | Arcpr_1359 | Hypothetical protein. | Ribosomal protein L25/L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. | 0.671 |
ADB58412.1 | rpl3 | Arcpr_1363 | Arcpr_1361 | Hypothetical protein. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.671 |
ADB58412.1 | rpl4 | Arcpr_1363 | Arcpr_1360 | Hypothetical protein. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.671 |
ADB58412.1 | rps17 | Arcpr_1363 | Arcpr_1352 | Hypothetical protein. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.587 |
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