STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE56232.1KEGG: dde:Dde_3321 sodium/panthothenate symporter; TIGRFAM: sodium/pantothenate symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (491 aa)    
Predicted Functional Partners:
ADE56231.1
PFAM: protein of unknown function DUF997; KEGG: dvu:DVU0087 hypothetical protein.
 
  
 0.969
ADE56230.1
KEGG: dvm:DvMF_2297 hypothetical protein.
       0.727
ADE56229.1
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ppd:Ppro_3588 PpiC-type peptidyl-prolyl cis- trans isomerase.
       0.500
panB
3-methyl-2-oxobutanoatehydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
     
 0.448
ADE56233.1
KEGG: ent:Ent638_2397 regulatory protein, IclR; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.
       0.431
ADE56228.1
PFAM: YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein; KEGG: ppd:Ppro_1753 prolyl-tRNA synthetase.
       0.414
Your Current Organism:
Aminobacterium colombiense
NCBI taxonomy Id: 572547
Other names: A. colombiense DSM 12261, Aminobacterium colombiense DSM 12261, Aminobacterium colombiense str. DSM 12261, Aminobacterium colombiense strain DSM 12261
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