STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE56345.1PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: Pyridoxal-phosphate dependent enzyme family protein. (489 aa)    
Predicted Functional Partners:
ADE56245.1
KEGG: avn:Avin_40420 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase.
 
 0.981
ADE56602.1
Methionine gamma-lyase; KEGG: cko:CKO_04984 hypothetical protein; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein.
  
 0.934
ADE56267.1
PFAM: aminotransferase class I and II; KEGG: ypi:YpsIP31758_1307 aminotransferase, classes I and II.
    
 0.916
ADE56244.1
KEGG: gur:Gura_3859 cysteine synthase A; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.
 
  
 
0.914
ADE56289.1
PFAM: aminotransferase class I and II; KEGG: mes:Meso_2107 aspartate aminotransferase.
  
 0.912
ADE56511.1
PFAM: aminotransferase class I and II; KEGG: ftm:FTM_0473 aspartate aminotransferase.
  
 0.912
ADE56655.1
PFAM: aminotransferase class I and II; KEGG: gur:Gura_2501 aminotransferase, class I and II.
  
 0.912
ADE57306.1
PFAM: aminotransferase class I and II; KEGG: gur:Gura_2501 aminotransferase, class I and II.
  
 0.912
ADE57719.1
PFAM: aminotransferase class I and II; KEGG: fph:Fphi_0426 aspartate aminotransferase.
  
 0.912
ADE57155.1
TIGRFAM: adenosylhomocysteinase; KEGG: sfu:Sfum_0366 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding; Acetohydroxy acid isomeroreductase catalytic domain protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; S-adenosyl-L-homocysteine hydrolase.
  
 0.857
Your Current Organism:
Aminobacterium colombiense
NCBI taxonomy Id: 572547
Other names: A. colombiense DSM 12261, Aminobacterium colombiense DSM 12261, Aminobacterium colombiense str. DSM 12261, Aminobacterium colombiense strain DSM 12261
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