STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE56385.1PFAM: protein of unknown function DUF554; KEGG: dvm:DvMF_3049 protein of unknown function DUF554. (235 aa)    
Predicted Functional Partners:
ADE56386.1
PFAM: inner-membrane translocator; KEGG: dvl:Dvul_1925 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.623
ADE56387.1
PFAM: inner-membrane translocator; KEGG: dde:Dde_0138 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.623
ADE56388.1
KEGG: dat:HRM2_06320 RbsA1; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.623
ADE56389.1
PFAM: basic membrane lipoprotein; KEGG: dps:DP0677 hypothetical protein.
       0.552
ADE56497.1
PFAM: protein of unknown function DUF6 transmembrane; KEGG: dvl:Dvul_2528 hypothetical protein.
 
     0.428
Your Current Organism:
Aminobacterium colombiense
NCBI taxonomy Id: 572547
Other names: A. colombiense DSM 12261, Aminobacterium colombiense DSM 12261, Aminobacterium colombiense str. DSM 12261, Aminobacterium colombiense strain DSM 12261
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