STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE56677.1Transcriptional regulator, RpiR family; PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: bpd:BURPS668_A1857 RpiR family transcriptional regulator. (288 aa)    
Predicted Functional Partners:
ADE56679.1
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: geo:Geob_0718 transcriptional regulator, XRE family.
 
   
 0.615
ADE56678.1
KEGG: gsu:GSU2227 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.561
ADE57587.1
PFAM: OstA family protein; KEGG: dat:HRM2_26760 OstA.
  
     0.497
ADE57759.1
KEGG: noc:Noc_0987 hypothetical protein.
 
     0.463
ADE56681.1
PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pap:PSPA7_2120 YbaK/prolyl-tRNA synthetase associated region.
 
     0.453
ADE56252.1
PFAM: Lytic transglycosylase catalytic; KEGG: bur:Bcep18194_B0495 lytic transglycosylase, catalytic.
  
   
 0.445
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
  
 0.435
ADE56377.1
PFAM: AsmA family protein; KEGG: rlt:Rleg2_3627 protein of unknown function DUF490.
  
     0.419
ADE56566.1
KEGG: xcv:XCV4373 LacI family transcription regulator; PFAM: regulatory protein LacI; SMART: regulatory protein LacI.
  
  
 0.405
ADE56680.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dar:Daro_1985 regulatory protein, LysR:LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
     
 0.404
Your Current Organism:
Aminobacterium colombiense
NCBI taxonomy Id: 572547
Other names: A. colombiense DSM 12261, Aminobacterium colombiense DSM 12261, Aminobacterium colombiense str. DSM 12261, Aminobacterium colombiense strain DSM 12261
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.