STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE57015.1KEGG: hypothetical protein. (103 aa)    
Predicted Functional Partners:
ADE57017.1
PFAM: carboxyl transferase; KEGG: dal:Dalk_3780 propionyl-CoA carboxylase.
  
 0.996
ADE56412.1
PFAM: carboxyl transferase; KEGG: dal:Dalk_3780 propionyl-CoA carboxylase.
  
 0.993
ADE56414.1
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sfu:Sfum_0461 hypothetical protein.
 
 
0.962
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.921
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
    
 0.920
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.920
ADE56884.1
PFAM: Conserved carboxylase region; pyruvate carboxyltransferase; KEGG: hch:HCH_06704 pyruvate carboxylase subunit B.
   
 
 0.897
ADE57706.1
PFAM: Transketolase central region; Transketolase domain protein; KEGG: dat:HRM2_47610 PdhB.
  
 
 0.699
fabZ
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.
  
  
 0.695
ADE57020.1
TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: gem:GM21_0572 methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase.
  
  
 0.667
Your Current Organism:
Aminobacterium colombiense
NCBI taxonomy Id: 572547
Other names: A. colombiense DSM 12261, Aminobacterium colombiense DSM 12261, Aminobacterium colombiense str. DSM 12261, Aminobacterium colombiense strain DSM 12261
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