STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE57329.1PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin, putative. (53 aa)    
Predicted Functional Partners:
ADE57324.1
KEGG: cti:RALTA_B0192 putative Flp pilus assembly CpaB; TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein.
 
  
 0.964
ADE57325.1
KEGG: vpa:VP2417 hypothetical protein.
 
  
 0.938
ADE57326.1
PFAM: TadE family protein; KEGG: sfu:Sfum_1495 TadE family protein.
 
  
 0.937
ADE57327.1
PFAM: peptidase A24A prepilin type IV; KEGG: dps:DP1537 hypothetical protein.
 
  
 0.922
ADE57320.1
PFAM: Type II secretion system F domain; KEGG: nmu:Nmul_A2353 type II secretion system protein.
 
  
 0.910
ADE57319.1
PFAM: Type II secretion system F domain; KEGG: ppd:Ppro_2698 type II secretion system protein.
 
  
 0.899
ADE57318.1
PFAM: protein of unknown function DUF192; KEGG: slo:Shew_0641 hypothetical protein.
 
     0.875
ADE57321.1
PFAM: type II secretion system protein E; KEGG: sfu:Sfum_1498 type II secretion system protein E.
 
  
 0.851
ADE57322.1
KEGG: pol:Bpro_2554 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver.
 
    0.829
ADE57328.1
Hypothetical protein.
       0.757
Your Current Organism:
Aminobacterium colombiense
NCBI taxonomy Id: 572547
Other names: A. colombiense DSM 12261, Aminobacterium colombiense DSM 12261, Aminobacterium colombiense str. DSM 12261, Aminobacterium colombiense strain DSM 12261
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.