STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE57472.1Putative protein-S-isoprenylcysteine methyltransferase-like protein; KEGG: sfu:Sfum_3255 isoprenylcysteine carboxyl methyltransferase. (187 aa)    
Predicted Functional Partners:
ADE57473.1
PFAM: conserved hypothetical protein; KEGG: maq:Maqu_3008 hypothetical protein.
 
    0.857
ADE57476.1
PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; KEGG: reu:Reut_A0719 NAD-dependent epimerase/dehydratase:3-beta hydroxysteroid dehydrogenase/isomerase:dTDP-4-dehydrorhamnose reductase.
  
    0.789
ADE57474.1
TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: gme:Gmet_0923 D-alpha,beta-D-heptose 1,7- bisphosphate phosphatase.
       0.787
ADE57475.1
KEGG: hypothetical protein.
       0.784
ADE57477.1
PFAM: Nucleotidyl transferase; KEGG: pen:PSEEN2466 phospho-sugar nucleotidyltransferase.
       0.746
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate; Belongs to the SIS family. GmhA subfamily.
       0.746
ADE57479.1
KEGG: afw:Anae109_1810 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver.
       0.595
ADE57602.1
PFAM: O-antigen polymerase; KEGG: msu:MS0243 RfaL protein.
  
     0.468
ADE57054.1
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: eba:p2A97 putative periplasmic binding protein.
 
     0.447
rpsM
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
  
    0.438
Your Current Organism:
Aminobacterium colombiense
NCBI taxonomy Id: 572547
Other names: A. colombiense DSM 12261, Aminobacterium colombiense DSM 12261, Aminobacterium colombiense str. DSM 12261, Aminobacterium colombiense strain DSM 12261
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