STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE57632.1KEGG: mxa:MXAN_6693 fibril biogenesis regulator DifD; PFAM: response regulator receiver; SMART: response regulator receiver. (120 aa)    
Predicted Functional Partners:
ADE56833.1
Integral membrane sensor signal transduction histidine kinase; KEGG: gme:Gmet_1027 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
 
 
 
 0.643
ADE56834.1
Two component transcriptional regulator, winged helix family; KEGG: gsu:GSU2946 DNA-binding heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
 
  
 0.593
ADE57800.1
KEGG: dal:Dalk_1426 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein.
 
   
 0.557
codY
GTP-sensing pleiotropic transcriptional repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family.
     
 0.554
argH
KEGG: dal:Dalk_0410 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase.
       0.455
ADE57630.1
PFAM: protein of unknown function DUF501; KEGG: mmw:Mmwyl1_3951 hypothetical protein.
       0.455
ADE57631.1
PFAM: RNA binding S1 domain protein; KEGG: S1 RNA binding domain containing protein.
       0.455
ADE57956.1
TIGRFAM: PAS sensor protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; PAS fold-4 domain protein; PAS fold domain protein; KEGG: sat:SYN_00099 two-component response regulator; SMART: metal-dependent phosphohydrolase HD region; PAS domain containing protein.
 
 
 0.447
ADE56670.1
TIGRFAM: PAS sensor protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; PAS fold domain protein; KEGG: rfr:Rfer_3391 putative PAS/PAC sensor protein; SMART: metal-dependent phosphohydrolase HD region; PAS domain containing protein.
 
 
 0.440
ADE57497.1
TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein; PFAM: Soluble ligand binding domain; helix-hairpin- helix motif; KEGG: ngo:NGO1178 ComE1; SMART: Helix-hairpin-helix DNA-binding class 1.
  
    0.435
Your Current Organism:
Aminobacterium colombiense
NCBI taxonomy Id: 572547
Other names: A. colombiense DSM 12261, Aminobacterium colombiense DSM 12261, Aminobacterium colombiense str. DSM 12261, Aminobacterium colombiense strain DSM 12261
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.