STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE57737.1Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: gme:Gmet_2721 diguanylate cyclase with GAF sensor; SMART: GGDEF domain containing protein; GAF domain protein. (794 aa)    
Predicted Functional Partners:
ADE56670.1
TIGRFAM: PAS sensor protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; PAS fold domain protein; KEGG: rfr:Rfer_3391 putative PAS/PAC sensor protein; SMART: metal-dependent phosphohydrolase HD region; PAS domain containing protein.
 
 
 0.953
ADE57956.1
TIGRFAM: PAS sensor protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; PAS fold-4 domain protein; PAS fold domain protein; KEGG: sat:SYN_00099 two-component response regulator; SMART: metal-dependent phosphohydrolase HD region; PAS domain containing protein.
 
 
 0.953
leuS
KEGG: dvl:Dvul_1861 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.909
ADE57935.1
TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: hha:Hhal_1865 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region.
 
 0.833
ADE56668.1
TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold-3 domain protein; PAS fold domain protein; KEGG: sat:SYN_01234 response regulator receiver domain-containing protein; SMART: metal-dependent phosphohydrolase HD region; PAC repeat-containing protein; PAS domain containing protein.
 
 0.819
ADE57984.1
TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation and phosphoacceptor region; PAS fold-4 domain protein; ATP- binding region ATPase domain protein; PAS fold domain protein; KEGG: sat:SYN_00776 signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein.
   
 
 0.758
ADE57741.1
TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; PAS fold-4 domain protein; KEGG: sat:SYN_00099 two-component response regulator; SMART: PAS domain containing protein.
  
 
 0.750
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
   
   0.738
ADE56808.1
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dat:HRM2_16560 RsbW2.
  
 
 0.729
ADE56834.1
Two component transcriptional regulator, winged helix family; KEGG: gsu:GSU2946 DNA-binding heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
 
 
 0.657
Your Current Organism:
Aminobacterium colombiense
NCBI taxonomy Id: 572547
Other names: A. colombiense DSM 12261, Aminobacterium colombiense DSM 12261, Aminobacterium colombiense str. DSM 12261, Aminobacterium colombiense strain DSM 12261
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.