STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE57808.1PFAM: aminotransferase class-III; KEGG: sfu:Sfum_2649 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (451 aa)    
Predicted Functional Partners:
panC
Pantoate/beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
     
 0.908
ADE57810.1
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: similar to Cystathionine-beta-synthase; K01697 cystathionine beta-synthase.
  
 
 0.813
ADE57809.1
Hypothetical protein.
       0.775
ADE57001.1
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
   
 0.658
ADE57807.1
PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dps:DP0493 DctP (periplasmic C4-dicarboxylate binding protein).
       0.553
ADE57950.1
PFAM: aminotransferase class V; KEGG: mxa:MXAN_0256 aminotransferase, class V.
  
 
 0.505
ADE56595.1
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cha:CHAB381_1793 hydrolase in agr operon (ORF 5).
 
  
 0.472
ADE57989.1
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gme:Gmet_3536 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
  
 0.470
ADE57927.1
KEGG: msu:MS1478 PfoR protein.
   
    0.461
ADE57348.1
PFAM: aminotransferase class I and II; KEGG: histidinol-phosphate aminotransferase, putative; K00817 histidinol-phosphate aminotransferase.
 
  
 0.435
Your Current Organism:
Aminobacterium colombiense
NCBI taxonomy Id: 572547
Other names: A. colombiense DSM 12261, Aminobacterium colombiense DSM 12261, Aminobacterium colombiense str. DSM 12261, Aminobacterium colombiense strain DSM 12261
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