STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE57828.1PFAM: lipopolysaccharide biosynthesis protein; KEGG: cvi:CV_0772 hypothetical protein. (418 aa)    
Predicted Functional Partners:
ADE57829.1
PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: lch:Lcho_0648 polysaccharide export protein.
 
 
 0.992
ADE57827.1
Hypothetical protein.
       0.737
ADE57830.1
PFAM: polysaccharide biosynthesis protein CapD; 3- beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: gme:Gmet_1338 polysaccharide biosynthesis protein CapD.
  
  
 0.601
ADE57832.1
Undecaprenyl-phosphate galactose phosphotransferase; KEGG: ftn:FTN_1429 galactosyl transferase; PFAM: sugar transferase.
  
  
 0.599
ADE57844.1
PFAM: polysaccharide biosynthesis protein; KEGG: prw:PsycPRwf_0243 polysaccharide biosynthesis protein.
  
  
 0.447
ADE57834.1
PFAM: glycosyl transferase group 1; KEGG: reh:H16_B0025 glycosyl transferase.
 
  
 0.434
ADE57533.1
PFAM: O-antigen polymerase; KEGG: bph:Bphy_0448 O-antigen polymerase.
 
  
 0.406
Your Current Organism:
Aminobacterium colombiense
NCBI taxonomy Id: 572547
Other names: A. colombiense DSM 12261, Aminobacterium colombiense DSM 12261, Aminobacterium colombiense str. DSM 12261, Aminobacterium colombiense strain DSM 12261
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.