STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE57867.1PFAM: Amidohydrolase 3; amidohydrolase; KEGG: ilo:IL1207 metal-dependent amidohydrolase with the TIM-barrel fold. (544 aa)    
Predicted Functional Partners:
ADE57866.1
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: similar to C-terminal binding protein 1; K04496 C-terminal binding protein.
     
 0.737
ADE57865.1
PFAM: aminotransferase class I and II; DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: pla:Plav_2300 aspartate aminotransferase.
       0.700
ADE57864.1
KEGG: csa:Csal_1747 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria.
       0.577
ADE57863.1
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: tmz:Tmz1t_0544 tripartite ATP-independent periplasmic transporter DctQ component.
       0.530
ADE57862.1
KEGG: dps:DP3053 DctMQ fusion protein (C4- dicarboxylate transporter); TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Citrate transporter.
      0.510
ADE57628.1
PFAM: beta-lactamase; KEGG: bpy:Bphyt_5769 beta-lactamase.
 
     0.476
ADE57868.1
PFAM: ATP-NAD/AcoX kinase; KEGG: swp:swp_3128 ATP-NAD/AcoX kinase.
       0.423
ADE57869.1
KEGG: vei:Veis_2458 glycine dehydrogenase subunit 2.
       0.423
Your Current Organism:
Aminobacterium colombiense
NCBI taxonomy Id: 572547
Other names: A. colombiense DSM 12261, Aminobacterium colombiense DSM 12261, Aminobacterium colombiense str. DSM 12261, Aminobacterium colombiense strain DSM 12261
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