STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE57930.1KEGG: dal:Dalk_1623 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR. (150 aa)    
Predicted Functional Partners:
ADE57929.1
KEGG: dal:Dalk_2553 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE.
 
  
 0.840
ADE57928.1
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: glo:Glov_3440 diguanylate cyclase; SMART: GGDEF domain containing protein.
 
  
 0.728
ADE57931.1
PFAM: periplasmic glucan biosynthesis protein MdoG; KEGG: mca:MCA3095 glucan biosynthesis protein G.
     
 0.637
ADE57932.1
Hypothetical protein.
       0.575
ADE57933.1
KEGG: csa:Csal_1286 glucosyltransferase MdoH.
     
 0.534
ADE56466.1
PFAM: protein of unknown function DUF470; protein of unknown function DUF472; protein of unknown function DUF471; KEGG: ade:Adeh_2257 hypothetical protein.
 
  
 0.523
ADE57737.1
Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: gme:Gmet_2721 diguanylate cyclase with GAF sensor; SMART: GGDEF domain containing protein; GAF domain protein.
 
  
 0.488
ADE57934.1
PFAM: NUDIX hydrolase; Zinc ribbon NADH pyrophosphatase; NADH pyrophosphatase-like; KEGG: dat:HRM2_47710 NudC.
       0.461
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.433
Your Current Organism:
Aminobacterium colombiense
NCBI taxonomy Id: 572547
Other names: A. colombiense DSM 12261, Aminobacterium colombiense DSM 12261, Aminobacterium colombiense str. DSM 12261, Aminobacterium colombiense strain DSM 12261
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