STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE57962.1PFAM: histidine triad (HIT) protein; KEGG: gur:Gura_2074 histidine triad (HIT) protein. (163 aa)    
Predicted Functional Partners:
ADE57961.1
PFAM: protein of unknown function UPF0029; KEGG: dat:HRM2_43180 hypothetical protein.
       0.819
thrS
TIGRFAM: threonyl-tRNA synthetase; KEGG: gme:Gmet_1411 threonyl-tRNA synthetase / Ser- tRNA(Thr) hydrolase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; Belongs to the class-II aminoacyl-tRNA synthetase family.
    
 0.760
ADE57201.1
KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain.
  
   0.604
ADE57960.1
PFAM: BioY protein; KEGG: sat:SYN_00210 hypothetical protein.
       0.553
ADE57963.1
Hypothetical protein.
       0.551
ADE57964.1
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: pca:Pcar_3138 partition protein ParB-like; SMART: ParB domain protein nuclease; Belongs to the ParB family.
       0.483
ADE57965.1
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: gme:Gmet_3413 chromosome segregation ATPase.
     
 0.471
ADE57454.1
KEGG: sfu:Sfum_0411 helicase domain-containing protein; PFAM: helicase domain protein; type III restriction protein res subunit; SMART: helicase domain protein; DEAD-like helicase.
  
 
  0.459
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.454
Your Current Organism:
Aminobacterium colombiense
NCBI taxonomy Id: 572547
Other names: A. colombiense DSM 12261, Aminobacterium colombiense DSM 12261, Aminobacterium colombiense str. DSM 12261, Aminobacterium colombiense strain DSM 12261
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