STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE58014.1Peptidase T-like protein; KEGG: sse:Ssed_3656 tripeptidase T; TIGRFAM: peptidase T-like protein; PFAM: peptidase dimerisation domain protein; peptidase M20. (365 aa)    
Predicted Functional Partners:
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
    
 0.642
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
 
 0.639
ADE57502.1
PFAM: peptidase M24; creatinase; KEGG: gsu:GSU2021 xaa-pro dipeptidase.
  
 
 0.550
ADE57771.1
PFAM: peptidase M24; KEGG: slo:Shew_0955 peptidase M24.
  
 
 0.550
ADE58015.1
PFAM: Formiminotransferase-cyclodeaminase; KEGG: dat:HRM2_16720 FchA.
       0.542
hutH
TIGRFAM: histidine ammonia-lyase; KEGG: sfu:Sfum_2378 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; Belongs to the PAL/histidase family.
     
 0.524
ADE57218.1
PFAM: protein of unknown function DUF34; KEGG: dat:HRM2_29360 hypothetical protein.
  
    0.425
Your Current Organism:
Aminobacterium colombiense
NCBI taxonomy Id: 572547
Other names: A. colombiense DSM 12261, Aminobacterium colombiense DSM 12261, Aminobacterium colombiense str. DSM 12261, Aminobacterium colombiense strain DSM 12261
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