STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL39459.1PAS domain S-box-containing protein. (588 aa)    
Predicted Functional Partners:
SEK79375.1
Hypothetical protein.
 
 0.992
SEL39429.1
Regulatory protein, luxR family.
 
 
 0.966
SEL39188.1
Two-component system, OmpR family, sensor histidine kinase TorS.
 
 
 0.878
SEL39491.1
Hypothetical protein.
 
     0.878
SEL39559.1
Hypothetical protein.
 
     0.799
SEK58115.1
Response regulator receiver domain-containing protein.
 
 0.742
SEK58061.1
Response regulator receiver domain-containing protein.
 
 0.740
SEK58092.1
Response regulator receiver domain-containing protein.
 
 0.737
SEK49134.1
Response regulator receiver domain-containing protein.
 
 0.728
SEL39689.1
Hypothetical protein.
 
     0.704
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.