STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK26635.1TRAP transporter, DctM subunit. (438 aa)    
Predicted Functional Partners:
SEK26608.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.997
SEK26730.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 
 0.978
SEK26759.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
 0.971
SEK26782.1
TRAP transporter, DctM subunit.
 
  
 
0.945
SEK26582.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.904
SEK26656.1
malonyl-CoA decarboxylase.
 
     0.852
SEK26682.1
malonyl-CoA/methylmalonyl-CoA synthetase.
 
  
 0.852
SEK26561.1
Transcriptional regulator, GntR family.
 
     0.631
SEL12007.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
 0.598
SEK91752.1
Acyl transferase domain-containing protein.
     
 0.502
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.