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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK32179.1Hypothetical protein. (227 aa)    
Predicted Functional Partners:
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
    
   0.901
SEK32207.1
Hypothetical protein.
       0.572
SEK52531.1
Hypothetical protein.
  
     0.535
SEK32130.1
Hypothetical protein.
       0.517
SEK32154.1
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
       0.517
SEK68385.1
Cyclin-dependent kinase inhibitor 3 (CDKN3).
  
  
  0.502
SEL11338.1
Phosphotransferase enzyme family protein.
  
     0.444
SEK93965.1
Cro/C1-type HTH DNA-binding domain-containing protein.
  
     0.443
SEL11801.1
Hypothetical protein.
  
     0.443
SEK43152.1
Uncharacterized membrane protein YjgN, DUF898 family.
  
     0.442
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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