STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK32440.1Transcriptional regulator, AraC family with amidase-like domain. (333 aa)    
Predicted Functional Partners:
SEK32487.1
Transcriptional regulator, DeoR family.
 
   
 0.652
SEK32461.1
Histidinol-phosphatase, inositol monophosphatase family.
       0.576
SEL32376.1
Sarcosine oxidase subunit delta.
 
     0.569
SEL32336.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
     0.501
SEK32512.1
Glycine betaine/proline transport system substrate-binding protein.
 
     0.467
SEL32396.1
Sarcosine oxidase subunit beta.
  
     0.448
SEK68128.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
     0.444
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
   0.415
SEK32570.1
Glycine betaine/proline transport system permease protein.
 
     0.412
lexA
SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
   
   0.405
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.