STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK33452.1Uncharacterized conserved protein, DUF849 family. (281 aa)    
Predicted Functional Partners:
SEK53500.1
3-oxoacid CoA-transferase subunit A.
    
 0.708
SEK33503.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
     0.707
SEK33528.1
Hypothetical protein.
 
     0.701
SEK53523.1
3-oxoacid CoA-transferase subunit B.
    
  0.694
SEK33481.1
Benzoate membrane transport protein.
       0.651
lcdH
Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
 
 0.623
SEK39087.1
acyl-CoA thioester hydrolase; Manually curated.
 
 
 0.550
SEK33424.1
Muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
       0.498
SEK33561.1
Catechol 1,2-dioxygenase.
     
 0.458
SEK74415.1
Kynurenine formamidase.
  
    0.455
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.