STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK37828.1Hypothetical protein. (309 aa)    
Predicted Functional Partners:
SEK37856.1
Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase.
       0.862
SEK37888.1
TatD DNase family protein.
       0.862
SEK37899.1
DNA polymerase III, delta prime subunit.
       0.862
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.862
SEK37944.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
       0.862
SEK75003.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
  
 0.772
SEL13634.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
  
 0.772
SEK37972.1
Sporulation related domain-containing protein.
       0.741
SEK37798.1
Uncharacterized membrane protein.
       0.598
SEK51363.1
Hypothetical protein.
  
     0.439
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.