STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK42866.1LicD family protein. (304 aa)    
Predicted Functional Partners:
SEK42844.1
Glycerol-3-phosphate cytidylyltransferase.
 
     0.892
cysC
Adenylylsulfate kinase /sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
    
 0.562
SEK67522.1
Hypothetical protein.
  
     0.478
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
  0.452
SEK32154.1
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
   
  0.446
SEK32607.1
4-methylaminobutanoate oxidase (formaldehyde-forming); Belongs to the GcvT family.
   
  0.446
SEK60708.1
4-methylaminobutanoate oxidase (formaldehyde-forming); Belongs to the GcvT family.
   
  0.446
SEK60775.1
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
   
  0.446
SEK98202.1
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
   
  0.446
SEK98265.1
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
   
  0.446
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.