STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK43074.1Cytochrome P450. (452 aa)    
Predicted Functional Partners:
SEK91752.1
Acyl transferase domain-containing protein.
  
 0.996
SEK33347.1
Benzoate/toluate 1,2-dioxygenase reductase subunit.
  
 0.980
SEL12956.1
Ferredoxin-NADP reductase.
  
 0.980
SEK91703.1
Natural product biosynthesis luciferase-like monooxygenase domain-containing protein.
  
 
 0.975
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.973
SEK80148.1
Ferredoxin, 2Fe-2S.
  
 0.939
SEK29637.1
Acyl carrier protein.
   
 0.928
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.928
SEL03892.1
fatty-acyl-CoA synthase.
  
 0.926
SEK26682.1
malonyl-CoA/methylmalonyl-CoA synthetase.
   
 0.915
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.