STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK43609.1(2S)-methylsuccinyl-CoA dehydrogenase. (564 aa)    
Predicted Functional Partners:
SEL20064.1
L-erythro-3-methylmalyl-CoA dehydratase.
  
 0.981
SEK43376.1
Electron transfer flavoprotein alpha subunit apoprotein.
 0.971
SEK66541.1
(R)-ethylmalonyl-CoA mutase.
 
 
 0.964
SEK43344.1
Electron transfer flavoprotein beta subunit.
 
 
 0.960
SEK72262.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
 
 0.956
SEK34542.1
Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.811
SEK91752.1
Acyl transferase domain-containing protein.
  
 0.805
SEK43433.1
3-hydroxybutyryl-CoA dehydrogenase.
 0.803
SEK66461.1
crotonyl-CoA carboxylase/reductase.
  
  0.800
lcdH
Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
  
 0.743
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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