STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK44338.1Cystathione beta-lyase. (389 aa)    
Predicted Functional Partners:
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
 
 
 0.943
SEL19046.1
Cystathionine gamma-synthase.
 
 
 0.943
SEL31411.1
Cysteine synthase A.
    
 0.934
SEL01623.1
O-acetylhomoserine sulfhydrylase.
   
 0.931
SEK33041.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
     
 0.905
SEK98601.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
     
 0.905
SEK54517.1
Homoserine dehydrogenase.
    
 0.804
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
   
 
  0.800
SEK54079.1
Leucyl aminopeptidase; Belongs to the peptidase M17 family.
   
 
  0.792
SEK37736.1
Threonine dehydratase.
    
  0.761
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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