STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK48617.1ATP-binding cassette, subfamily B. (596 aa)    
Predicted Functional Partners:
SEK37014.1
ATP-binding cassette, subfamily C, LapB.
   
0.965
SEL32117.1
ATP-binding cassette, subfamily B.
  
 
0.853
SEK91752.1
Acyl transferase domain-containing protein.
  
 0.838
SEL18009.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
     
0.824
SEK48071.1
Ribosome-dependent ATPase.
  
0.781
SEL04866.1
Cu-processing system ATP-binding protein.
  
0.738
SEK61378.1
ABC-2 type transport system ATP-binding protein.
   
0.720
SEL24823.1
ABC-2 type transport system ATP-binding protein.
   
0.720
SEK80230.1
Protease I.
   
  0.613
SEL20680.1
Putative intracellular protease/amidase.
   
  0.613
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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