STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK51092.1Zn-dependent dipeptidase, dipeptidase homolog. (337 aa)    
Predicted Functional Partners:
SEK51149.1
Hypothetical protein.
 
     0.894
SEK51182.1
Protein of unknown function.
 
     0.877
SEK51063.1
Aldehyde dehydrogenase (NAD+).
 
     0.754
SEK51041.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.744
SEL00327.1
(2R)-3-sulfolactate dehydrogenase (NADP+); Belongs to the LDH2/MDH2 oxidoreductase family.
 
    0.701
SEK51127.1
Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
 
     0.698
SEL17873.1
Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family; Belongs to the LDH2/MDH2 oxidoreductase family.
  
    0.583
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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