STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK52585.1Transcriptional regulator, LysR family; Manually curated; Belongs to the LysR transcriptional regulatory family. (295 aa)    
Predicted Functional Partners:
SEK52642.1
Hypothetical protein.
 
     0.788
SEL36457.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.665
SEK52613.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.649
SEK92367.1
LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator; Belongs to the LysR transcriptional regulatory family.
  
     0.635
SEK59722.1
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.611
SEK33847.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.595
SEL28867.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.585
SEK71112.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.584
SEK47508.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.556
SEK97406.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.555
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.