STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK53708.1Pilus assembly protein CpaE. (408 aa)    
Predicted Functional Partners:
SEK53758.1
Tight adherence protein B.
 
  
 0.991
SEK53628.1
Pilus assembly protein CpaB.
 
  
 0.988
SEK53780.1
Tight adherence protein C.
 
  
 0.981
SEL13839.1
Tight adherence protein B.
 
  
 0.970
SEK53655.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.965
SEK53730.1
Pilus assembly protein CpaF.
 
  
 0.959
SEL13813.1
Tight adherence protein C.
 
  
 0.941
SEK53802.1
Tetratricopeptide repeat-containing protein.
 
  
 0.938
SEK53851.1
Prepilin peptidase CpaA.
 
  
 0.934
SEK54403.1
TadE-like protein.
 
  
 0.928
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.