STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK58679.1Citrate/tricarballylate utilization protein. (356 aa)    
Predicted Functional Partners:
SEK58653.1
Tricarballylate dehydrogenase.
 
 0.998
SEK64443.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
   
 0.979
SEK64515.1
Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 0.969
SEK64422.1
Formate dehydrogenase major subunit.
   
 0.960
SEL30628.1
Formate dehydrogenase alpha subunit.
   
 0.960
SEK43344.1
Electron transfer flavoprotein beta subunit.
   
 
 0.957
SEK69650.1
Glutamate synthase (NADPH) large subunit.
  
 
  0.944
SEK99440.1
NADH dehydrogenase subunit E.
   
 0.941
SEL30569.1
Formate dehydrogenase gamma subunit.
   
 0.941
SEK75003.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
 0.838
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.