STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK59220.1Dimethylsulfoniopropionate lyase DddP. (448 aa)    
Predicted Functional Partners:
SEK94015.1
Hypothetical protein.
  
     0.686
SEL32572.1
Hypothetical protein.
  
     0.672
SEK55582.1
Fatty acid desaturase.
  
     0.662
SEK98265.1
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
 
 
 0.618
SEK59189.1
Membrane-bound lytic murein transglycosylase B.
 
     0.611
SEK93985.1
Phenylpropionate dioxygenase, large terminal subunit.
  
     0.607
SEK68094.1
Sarcosine oxidase, gamma subunit family, heterotetrameric form.
  
  
  0.588
SEK40017.1
ABC transporter, phosphonate, substrate-binding protein.
  
     0.585
SEK55619.1
Helix-turn-helix.
  
     0.584
SEK98202.1
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
 
 
 0.582
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
Server load: low (24%) [HD]