STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK61378.1ABC-2 type transport system ATP-binding protein. (313 aa)    
Predicted Functional Partners:
SEK61355.1
ABC-2 type transport system permease protein.
 
 0.973
SEL04882.1
Cu-processing system permease protein.
  
 0.966
SEK40868.1
ABC-2 type transport system permease protein.
 
 0.873
SEK67195.1
ATP-binding cassette, subfamily B/ATP-binding cassette, subfamily B, MsbA.
  
0.736
SEK48617.1
ATP-binding cassette, subfamily B.
   
0.720
SEK92565.1
Hypothetical protein.
   
 0.720
SEL28259.1
Capsular polysaccharide transport system permease protein.
    
  0.676
SEL28240.1
Capsular polysaccharide transport system permease protein.
    
 0.655
atpD
F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.605
atpD-2
ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.605
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.