STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK64494.1Hypothetical protein. (104 aa)    
Predicted Functional Partners:
SEK64515.1
Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
    0.869
SEK64470.1
Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
       0.848
SEK64532.1
Succinate dehydrogenase subunit D.
       0.828
SEK64559.1
Succinate dehydrogenase subunit C.
       0.822
SEK61946.1
Biopolymer transport protein ExbD.
  
     0.566
SEK38625.1
Biopolymer transport protein ExbD.
  
     0.544
SEK61972.1
Outer membrane transport energization protein ExbD.
  
     0.518
SEK38646.1
Outer membrane transport energization protein TonB.
  
     0.515
SEK99847.1
Hypothetical protein.
  
     0.506
SEK62011.1
Hypothetical protein.
  
     0.502
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.