STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK65290.1Amino acid/polyamine/organocation transporter, APC superfamily. (440 aa)    
Predicted Functional Partners:
SEK65305.1
Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain.
 
 
   0.887
SEL34254.1
Hypothetical protein.
    
 0.828
SEK65265.1
Cu+-exporting ATPase.
 
   
 0.805
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
 
  
 0.783
SEK65335.1
EF hand.
 
   
 0.675
SEK65566.1
Ion channel.
 
   
 0.586
SEK65445.1
Copper-resistance protein, CopA family.
 
  
 0.578
SEK91703.1
Natural product biosynthesis luciferase-like monooxygenase domain-containing protein.
  
 
 0.535
SEK35576.1
Transketolase; Belongs to the transketolase family.
   
 0.477
SEK73131.1
Fructose-bisphosphate aldolase, class I.
  
 
  0.455
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.