STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK65628.1Transglutaminase-like superfamily protein. (256 aa)    
Predicted Functional Partners:
SEK65611.1
Cobalt-zinc-cadmium efflux system protein.
 
   
 0.867
SEL33809.1
Type IV secretion system protein VirB2.
  
     0.684
SEL33833.1
Type IV secretion system protein VirB3.
  
     0.650
SEK65679.1
Cation diffusion facilitator family transporter.
 
    0.635
SEL33775.1
Hypothetical protein.
  
     0.578
SEK65812.1
Thioredoxin.
 
     0.569
SEL33995.1
Type IV secretion system protein VirB8.
  
     0.552
SEK65777.1
Disulfide bond formation protein DsbB; Belongs to the DsbB family.
 
     0.533
SEK65655.1
Cytochrome c, mono-and diheme variants.
       0.522
SEL34148.1
Type IV secretion system protein VirB6.
  
     0.512
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.