STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK69089.1Phospholipase D1/2. (541 aa)    
Predicted Functional Partners:
SEK92890.1
NifU homolog involved in Fe-S cluster formation.
   
   0.911
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.664
SEK69131.1
Uncharacterized membrane protein HdeD, DUF308 family.
       0.653
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
   
 0.649
SEK93337.1
Phosphatidate cytidylyltransferase; Belongs to the CDS family.
     
 0.609
SEL19728.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
     
 0.595
SEL11531.1
Phosphatidylcholine synthase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
 0.593
SEL32247.1
Hypothetical protein.
  
     0.586
SEL17186.1
Phospholipase_D-nuclease N-terminal.
  
     0.561
groS
Chaperonin GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.
    
  0.560
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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