STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK69479.1TRAP transporter, DctM subunit. (439 aa)    
Predicted Functional Partners:
SEK69443.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.995
SEK69495.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
 
  
  0.989
SEK69418.1
Predicted N-formylglutamate amidohydrolase.
 
     0.894
SEK69390.1
Transcriptional regulator, RpiR family.
 
     0.841
SEK69537.1
Glutamine synthetase.
 
     0.721
SEK69568.1
Acyl-CoA reductase.
 
     0.708
SEK69614.1
Alcohol dehydrogenase, class IV.
 
     0.663
SEK57689.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.514
SEK57739.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.483
SEL21358.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.449
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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