STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK76826.1Hypothetical protein. (291 aa)    
Predicted Functional Partners:
SEK56240.1
Capsular polysaccharide transport system permease protein.
  
    0.865
SEK79729.1
Core-2/I-Branching enzyme.
  
     0.770
SEK79863.1
ABC-type polysaccharide/polyol phosphate export permease.
  
    0.770
SEL24952.1
Sulfotransferase family protein.
  
     0.770
SEL24922.1
Core-2/I-Branching enzyme.
  
     0.766
SEK79701.1
LPS sulfotransferase NodH.
  
     0.765
SEK98316.1
Hypothetical protein.
  
     0.764
SEK79751.1
Glycosyl transferase family 2.
  
     0.763
SEL01575.1
Hypothetical protein.
  
     0.763
SEK79772.1
Glycosyl transferase family 2.
  
     0.759
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.