STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK80322.1D-amino-acid dehydrogenase. (412 aa)    
Predicted Functional Partners:
SEK68128.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.961
SEL32336.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.961
SEK69650.1
Glutamate synthase (NADPH) large subunit.
    
 0.743
SEL32376.1
Sarcosine oxidase subunit delta.
  
 0.704
SEK68159.1
Sarcosine oxidase subunit delta.
  
  0.674
SEL32309.1
Sarcosine oxidase subunit gamma.
  
  0.667
SEK68094.1
Sarcosine oxidase, gamma subunit family, heterotetrameric form.
  
  0.655
SEL18060.1
Proline racemase; Belongs to the proline racemase family.
  
  
  0.634
SEL25369.1
Glycine/D-amino acid oxidase.
  
  
  0.550
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.529
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.