STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK92294.1AAA domain-containing protein. (892 aa)    
Predicted Functional Partners:
SEK52261.1
acyl-CoA thioesterase-1.
   
 0.946
SEK92261.1
AAA-like domain-containing protein.
 
 
  0.890
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
  0.683
SEK68316.1
Hypothetical protein.
  
 0.548
SEL11331.1
Hypothetical protein.
  
 
  0.500
SEL13452.1
Hint domain-containing protein.
  
 
  0.486
SEK91406.1
Hint domain-containing protein.
  
 
  0.481
SEK79375.1
Hypothetical protein.
     
 0.421
SEK36826.1
Lamin Tail Domain.
    
  0.413
SEK37073.1
Hypothetical protein.
    
  0.413
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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