Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEK95284.1 | SEK95319.1 | SAMN05216208_2295 | SAMN05216208_2297 | Putative photosynthetic complex assembly protein 2. | Hypothetical protein. | 0.990 |
SEK95284.1 | SEK95340.1 | SAMN05216208_2295 | SAMN05216208_2298 | Putative photosynthetic complex assembly protein 2. | Putative photosynthetic complex assembly protein. | 0.989 |
SEK95284.1 | SEK95360.1 | SAMN05216208_2295 | SAMN05216208_2299 | Putative photosynthetic complex assembly protein 2. | PH domain-containing protein. | 0.991 |
SEK95284.1 | SEK95375.1 | SAMN05216208_2295 | SAMN05216208_2300 | Putative photosynthetic complex assembly protein 2. | Photosynthetic reaction center H subunit. | 0.955 |
SEK95284.1 | SEK95388.1 | SAMN05216208_2295 | SAMN05216208_2301 | Putative photosynthetic complex assembly protein 2. | MFS transporter, BCD family, chlorophyll transporter. | 0.955 |
SEK95284.1 | SEK95617.1 | SAMN05216208_2295 | SAMN05216208_2308 | Putative photosynthetic complex assembly protein 2. | B12 binding domain-containing protein. | 0.877 |
SEK95284.1 | SEK95641.1 | SAMN05216208_2295 | SAMN05216208_2309 | Putative photosynthetic complex assembly protein 2. | Transcriptional regulator PpsR. | 0.835 |
SEK95284.1 | SEK95675.1 | SAMN05216208_2295 | SAMN05216208_2311 | Putative photosynthetic complex assembly protein 2. | MFS transporter, BCD family, chlorophyll transporter. | 0.846 |
SEK95284.1 | acsF | SAMN05216208_2295 | SAMN05216208_2296 | Putative photosynthetic complex assembly protein 2. | Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family. | 0.997 |
SEK95284.1 | bchN | SAMN05216208_2295 | SAMN05216208_2306 | Putative photosynthetic complex assembly protein 2. | Ferredoxin protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.960 |
SEK95319.1 | SEK95284.1 | SAMN05216208_2297 | SAMN05216208_2295 | Hypothetical protein. | Putative photosynthetic complex assembly protein 2. | 0.990 |
SEK95319.1 | SEK95340.1 | SAMN05216208_2297 | SAMN05216208_2298 | Hypothetical protein. | Putative photosynthetic complex assembly protein. | 0.964 |
SEK95319.1 | SEK95360.1 | SAMN05216208_2297 | SAMN05216208_2299 | Hypothetical protein. | PH domain-containing protein. | 0.967 |
SEK95319.1 | SEK95375.1 | SAMN05216208_2297 | SAMN05216208_2300 | Hypothetical protein. | Photosynthetic reaction center H subunit. | 0.952 |
SEK95319.1 | SEK95388.1 | SAMN05216208_2297 | SAMN05216208_2301 | Hypothetical protein. | MFS transporter, BCD family, chlorophyll transporter. | 0.928 |
SEK95319.1 | SEK95617.1 | SAMN05216208_2297 | SAMN05216208_2308 | Hypothetical protein. | B12 binding domain-containing protein. | 0.873 |
SEK95319.1 | SEK95641.1 | SAMN05216208_2297 | SAMN05216208_2309 | Hypothetical protein. | Transcriptional regulator PpsR. | 0.844 |
SEK95319.1 | SEK95675.1 | SAMN05216208_2297 | SAMN05216208_2311 | Hypothetical protein. | MFS transporter, BCD family, chlorophyll transporter. | 0.844 |
SEK95319.1 | acsF | SAMN05216208_2297 | SAMN05216208_2296 | Hypothetical protein. | Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family. | 0.993 |
SEK95319.1 | bchN | SAMN05216208_2297 | SAMN05216208_2306 | Hypothetical protein. | Ferredoxin protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.925 |
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