STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK96136.1Phytoene synthase. (357 aa)    
Predicted Functional Partners:
SEK96153.1
Phytoene desaturase.
 
 0.999
SEK96061.1
1-hydroxycarotenoid 3,4-desaturase.
 
 0.986
SEK95695.1
Geranylgeranyl reductase.
 
 
 0.982
SEK96040.1
Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 0.962
SEL36388.1
Phytoene dehydrogenase-related protein.
 
 
 0.955
SEK96204.1
Magnesium chelatase subunit I; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
 
  
 0.938
SEK52197.1
Geranylgeranyl reductase family.
  
 
 0.929
SEK96090.1
Carotenoid 1,2-hydratase.
  
  
 0.920
SEK96181.1
Spheroidene monooxygenase.
 
  
 0.916
SEK27249.1
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.912
Your Current Organism:
Roseovarius nanhaiticus
NCBI taxonomy Id: 573024
Other names: CCTCC AB 208317, DSM 29590, LMG 24840, LMG:24840, MCCC 1A03543, R. nanhaiticus, Roseovarius nanhaiticus Wang et al. 2010, Roseovarius sp. NH52J, strain NH52J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.